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Cell2net 0.13 documentation

  • Installation
  • Tutorials
  • cell2net
  • Changelog
  • References
  • GitHub
  • Installation
  • Tutorials
  • cell2net
  • Changelog
  • References
  • GitHub

Section Navigation

  • K562
    • Pretrain Sequence Encoder for K562
    • Prepare data for training Cell2net model
    • Training Cell2Net models for K562
    • Peak-to-gene analysis with Cell2Net
    • Processing peak-to-gene links for method comparison
    • Evaluating Peak-to-Gene Predictions with Experimental Validation
  • PBMC
    • Pretrain Sequence Encoder for PBMC
    • Prepare Data for Cell2Net Training on PBMC
    • Training Cell2net for PBMC Dataset
    • Cell2Net Model Evaluation with Correlation Analysis
    • Cell2Net Model Interpretation: Transcription Factor Attribution
    • Cell2Net Transcription Factor Activity Analysis
  • Miscellaneous
    • in this tutorial, we show how to create mudata from 10x multiome output file
  • Tutorials
  • Miscellaneous

Miscellaneous#

Miscellaneous tutorials related to Cell2Net.

  • in this tutorial, we show how to create mudata from 10x multiome output file
  • data is downloaded from here

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Cell2Net Transcription Factor Activity Analysis

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in this tutorial, we show how to create mudata from 10x multiome output file
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