import warnings
warnings.filterwarnings("ignore")

import mudata as md
import muon as mu
import scanpy as sc

md.set_options(pull_on_update=False)

Running cells with 'zl_cell2net (Python 3.12.13)' requires the ipykernel package.

<a href='command:jupyter.createPythonEnvAndSelectController'>Create a Python Environment</a> with the required packages.

Or install 'ipykernel' using the command: 'conda install -n zl_cell2net ipykernel --update-deps --force-reinstall'

in this tutorial, we show how to create mudata from 10x multiome output file

data is downloaded from here

mu.read